PhytophthoraV1, Main, Exploration, bibRecord, 000C67

Diversity of indigenous endophytic bacteria associated with the roots of Chinese cabbage (Brassica campestris L.) cultivars and their antagonism towards pathogens.

Identifieur interne : 000C67 ( Main/Exploration ); précédent : 000C66; suivant : 000C68

Diversity of indigenous endophytic bacteria associated with the roots of Chinese cabbage (Brassica campestris L.) cultivars and their antagonism towards pathogens.

Auteurs : Md Azizul Haque [Corée du Sud, Bangladesh] ; Han Dae Yun [Corée du Sud] ; Kye Man Cho [Corée du Sud]

Source :

Journal of microbiology (Seoul, Korea) [ 1976-3794 ] ; 2016.

RBID : pubmed:27095454

Descripteurs français

KwdFr :
- ADN bactérien (génétique), Antibiose (MeSH), Antifongiques (pharmacologie), Bactéries (classification), Bactéries (enzymologie), Bactéries (génétique), Bactéries (isolement et purification), Biodiversité (MeSH), Brassica (microbiologie), Endophytes (classification), Endophytes (génétique), Endophytes (isolement et purification), Maladies des plantes (microbiologie), Microbiologie du sol (MeSH), Racines de plante (microbiologie), République de Corée (MeSH), Végétaux génétiquement modifiés (microbiologie).
MESH :
- enzymologie : Bactéries.
- génétique : ADN bactérien, Bactéries, Endophytes.
- isolement et purification : Bactéries, Endophytes.
- microbiologie : Brassica, Maladies des plantes, Racines de plante, Végétaux génétiquement modifiés.
- pharmacologie : Antifongiques.
- Antibiose, Biodiversité, Microbiologie du sol, République de Corée.

English descriptors

KwdEn :
- Antibiosis (MeSH), Antifungal Agents (pharmacology), Bacteria (classification), Bacteria (enzymology), Bacteria (genetics), Bacteria (isolation & purification), Biodiversity (MeSH), Brassica (microbiology), DNA, Bacterial (genetics), Endophytes (classification), Endophytes (genetics), Endophytes (isolation & purification), Plant Diseases (microbiology), Plant Roots (microbiology), Plants, Genetically Modified (microbiology), Republic of Korea (MeSH), Soil Microbiology (MeSH).
MESH :
- chemical , genetics : DNA, Bacterial.
- chemical , pharmacology : Antifungal Agents.
- classification : Bacteria, Endophytes.
- enzymology : Bacteria.
- genetics : Bacteria, Endophytes.
- isolation & purification : Bacteria, Endophytes.
- microbiology : Brassica, Plant Diseases, Plant Roots, Plants, Genetically Modified.
- Antibiosis, Biodiversity, Republic of Korea, Soil Microbiology.

Abstract

The study aimed to reveal the diversity of endophytic bacteria in the roots of Chinese cabbage (CC) cultivated in two areas in Korea, namely, Seosang-gun (SS) and Haenam-gun (HN), and also in a transgenic plant (TP) from the laboratory. A total of 653 colonies were isolated from the interior of CC roots, comprising 118, 302, and 233 isolates from SS, HN, and TP samples, respectively. Based on 16S rRNA gene sequence analysis, the isolates belonged to four major phylogenetic groups: high-G+C Gram-positive bacteria (HGC-GPB), low-G+C Gram-positive bacteria (LGC-GPB), Proteobacteria, and Bacteriodetes. The most dominant groups in the roots of the SS, HN, and TP cultivars were LGC-GPB (48.3%), Proteobacteria (50.2%), and HGC-GPB (38.2%), respectively. Importantly, most of the isolates that produced cell-walldegrading enzymes belonged to the genus Bacillus. Bacillus sp. (HNR03, TPR06), Bacillus pumilus (SSR07, HNR11, TPR07), and Bacillus subtilis (TPR03) showed high antagonism against the tested food-borne pathogenic bacteria. In addition, Bacillus sp. (HNR03, TPR06), Bacillus pumilus (SSR07, HNR11, HNR17, TPR11), Microbacterium oxidans (SSR09, TPR04), Bacillus cereus HNR10, Pseudomonas sp. HNR13, and Bacillus subtilis (TPR02, TPR03) showed strong antagonistic activity against the fungi Phythium ultimum, Phytophthora capsici, Fusarium oxysporum, and Rhizoctonia solani. The endophytes isolated from the TP cultivar showed the strongest antagonistic reactions against pathogens. This study is the first report on endophytic bacteria from Chinese cabbage roots.

DOI: 10.1007/s12275-016-5641-7
PubMed: 27095454

Affiliations:

Bangladesh, Corée du Sud

Links toward previous steps (curation, corpus...)

to stream Main, to step Corpus: 000C23
to stream Main, to step Curation: 000C23

Le document en format XML

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<term>Bactéries (enzymologie)</term>
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<term>Microbiologie du sol (MeSH)</term>
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<front><div type="abstract" xml:lang="en">The study aimed to reveal the diversity of endophytic bacteria in the roots of Chinese cabbage (CC) cultivated in two areas in Korea, namely, Seosang-gun (SS) and Haenam-gun (HN), and also in a transgenic plant (TP) from the laboratory. A total of 653 colonies were isolated from the interior of CC roots, comprising 118, 302, and 233 isolates from SS, HN, and TP samples, respectively. Based on 16S rRNA gene sequence analysis, the isolates belonged to four major phylogenetic groups: high-G+C Gram-positive bacteria (HGC-GPB), low-G+C Gram-positive bacteria (LGC-GPB), Proteobacteria, and Bacteriodetes. The most dominant groups in the roots of the SS, HN, and TP cultivars were LGC-GPB (48.3%), Proteobacteria (50.2%), and HGC-GPB (38.2%), respectively. Importantly, most of the isolates that produced cell-walldegrading enzymes belonged to the genus Bacillus. Bacillus sp. (HNR03, TPR06), Bacillus pumilus (SSR07, HNR11, TPR07), and Bacillus subtilis (TPR03) showed high antagonism against the tested food-borne pathogenic bacteria. In addition, Bacillus sp. (HNR03, TPR06), Bacillus pumilus (SSR07, HNR11, HNR17, TPR11), Microbacterium oxidans (SSR09, TPR04), Bacillus cereus HNR10, Pseudomonas sp. HNR13, and Bacillus subtilis (TPR02, TPR03) showed strong antagonistic activity against the fungi Phythium ultimum, Phytophthora capsici, Fusarium oxysporum, and Rhizoctonia solani. The endophytes isolated from the TP cultivar showed the strongest antagonistic reactions against pathogens. This study is the first report on endophytic bacteria from Chinese cabbage roots. </div>
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<Abstract><AbstractText>The study aimed to reveal the diversity of endophytic bacteria in the roots of Chinese cabbage (CC) cultivated in two areas in Korea, namely, Seosang-gun (SS) and Haenam-gun (HN), and also in a transgenic plant (TP) from the laboratory. A total of 653 colonies were isolated from the interior of CC roots, comprising 118, 302, and 233 isolates from SS, HN, and TP samples, respectively. Based on 16S rRNA gene sequence analysis, the isolates belonged to four major phylogenetic groups: high-G+C Gram-positive bacteria (HGC-GPB), low-G+C Gram-positive bacteria (LGC-GPB), Proteobacteria, and Bacteriodetes. The most dominant groups in the roots of the SS, HN, and TP cultivars were LGC-GPB (48.3%), Proteobacteria (50.2%), and HGC-GPB (38.2%), respectively. Importantly, most of the isolates that produced cell-walldegrading enzymes belonged to the genus Bacillus. Bacillus sp. (HNR03, TPR06), Bacillus pumilus (SSR07, HNR11, TPR07), and Bacillus subtilis (TPR03) showed high antagonism against the tested food-borne pathogenic bacteria. In addition, Bacillus sp. (HNR03, TPR06), Bacillus pumilus (SSR07, HNR11, HNR17, TPR11), Microbacterium oxidans (SSR09, TPR04), Bacillus cereus HNR10, Pseudomonas sp. HNR13, and Bacillus subtilis (TPR02, TPR03) showed strong antagonistic activity against the fungi Phythium ultimum, Phytophthora capsici, Fusarium oxysporum, and Rhizoctonia solani. The endophytes isolated from the TP cultivar showed the strongest antagonistic reactions against pathogens. This study is the first report on endophytic bacteria from Chinese cabbage roots. </AbstractText>
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<AffiliationInfo><Affiliation>Department of Food Science, Gyeongnam National University of Science and Technology, Jinju, 660-758, Republic of Korea.</Affiliation>
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<AffiliationInfo><Affiliation>Department of Biochemistry & Molecular Biology, Hajee Mohammad Danesh Science & Technology University, Dinajpur, 5200, Bangladesh.</Affiliation>
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<ForeName>Han Dae</ForeName>
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<AffiliationInfo><Affiliation>Research Institute of Life Sciences, Gyeongsang National University, Jinju, 660-701, Republic of Korea.</Affiliation>
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<AffiliationInfo><Affiliation>Department of Food Science, Gyeongnam National University of Science and Technology, Jinju, 660-758, Republic of Korea. kmcho@gntech.ac.kr.</Affiliation>
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Diversity of indigenous endophytic bacteria associated with the roots of Chinese cabbage (Brassica campestris L.) cultivars and their antagonism towards pathogens.

Diversity of indigenous endophytic bacteria associated with the roots of Chinese cabbage (Brassica campestris L.) cultivars and their antagonism towards pathogens.

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